PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001449.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 138aa MW: 15269.4 Da PI: 7.8119

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001449.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.6e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C++dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe+ r da++s+vyeA+ar+rdPvyG+v+ i++lqqq Itr_sc001449.1_g00005.1 14 PCAACKLLRRRCSQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQWRGDAVNSMVYEANARVRDPVYGCVAAISSLQQQ 99 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 +e l+++la +++e Itr_sc001449.1_g00005.1 100 IELLQTQLAIAQAE 113 *******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.332	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-44	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MKECAGRKQG GASPCAACKL LRRRCSQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ 60 ELPEQWRGDA VNSMVYEANA RVRDPVYGCV AAISSLQQQI ELLQTQLAIA QAEMVHMRMR 120 HFSADNTAMD SSGNAYDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-47	10	129	7	126	LOB family transfactor Ramosa2.1
5ly0_B	6e-47	10	129	7	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	5e-49	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163400.1	1e-92	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	8e-62	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0A0KBA8	3e-76	A0A0A0KBA8_CUCSA; Uncharacterized protein
STRING	XP_004294159.1	1e-77	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-54	LOB domain-containing protein 4