PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001450.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 1231aa    MW: 134937 Da    PI: 6.6184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001450.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-0712071231126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                               +kt+ C+ f+++G Ck G++C + H+
  Itr_sc001450.1_g00004.1 1207 PKTRVCK-FYESGRCKKGASCDYLHP 1231
                               79*****.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF475924.36E-19115193IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.107.6E-24116199IPR003121SWIB/MDM2 domain
PfamPF022012.2E-13122192IPR003121SWIB/MDM2 domain
SMARTSM001510.0027128197IPR019835SWIB domain
SMARTSM007191.8E-45254364IPR004343Plus-3 domain
PROSITE profilePS5136026.77254387IPR004343Plus-3 domain
SuperFamilySSF1590424.71E-31255383IPR004343Plus-3 domain
PfamPF031261.8E-23259362IPR004343Plus-3 domain
SuperFamilySSF552773.53E-15558612IPR003169GYF domain
PROSITE profilePS5082914.173561614IPR003169GYF domain
CDDcd000728.11E-16561617No hitNo description
SMARTSM004443.8E-14562616IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.5E-16563614IPR003169GYF domain
PfamPF022132.2E-11564605IPR003169GYF domain
SMARTSM003560.009312061231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.09812061231IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-412071231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-612071230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-612081230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1231 aa     Download sequence    Send to blast
MYLKGKLSLT LNELIQAKNP WKEAVAAQSN LQVANANDSK SVIGKSSEQI EVKNHKEREE  60
IAKKDSLSSE NQSTAKSENA GIAISNEHLG LMDPNVPPNK DKLGSANGSA MKGYTEWATK  120
ELLEFVAHMK NGDISALSQF DVQALLLDYI KRNNLRDPHK KSQIICDLRL KNLFGKPRLG  180
HIEMLKLIEF HFLIKEDTQK NAFIPAGIVG DISSHLETDE NSINPSLINK NKKRKTCKKG  240
EEKAPQVSLD EYAAIDAHNI NLIYLRRSLM ENLMEDTQKF HDDVVGSIVR IKITGSDQKQ  300
DMYRLVHVVG TSKVSTPYKI GEKTTDIMLE VLNLDKKEAV AIDTLSNQEF SEDECRRLRQ  360
SIKCGLVKRM TVGEIQKKAM ALRPVKLNES LESEILRLNH LRDRASENGR KKEYPLVCLK  420
TPEERRRRML EIPEVHTDPK MNPNYESEED AGGSEDKKQD ENLTQRNPRL NKSGSKQIPP  480
PMKKVKLEGA VIALMAQNKP NEKRQTSGVH TSGKRGNQTS VCGSVISGQV DKSVVRCGSE  540
TSVASLSTEN SAPSSDDSET EKLWHYRDPS GHIQGPFSMM QLRRWNKTGL FPPDMRVWIG  600
DKHNESILLS DALHGQFHKA SQILDNATIK DEGLEVALDS RGHAGWHGSS NGTVRESEGH  660
HSDDKVHPNA VRTDELKPRS LLQCLNLLKE NNSCSDKPQE CNMMHSSSDE QVHLGLAQQE  720
RGHDSGGLHT DTDQGNQKLY GNTMSQPTDM ASHEMQYNMQ SVMGQLFGSL PVTNSENTDS  780
GTHLESVTKS SDSPDQNGKI NVSDLPSPTP KSNYDSWEFQ AAKELLSLSS DIPLHRSGIQ  840
DMPSPPPKAN NDNQCGQTTE TKEHLPSNIP VQDSGPSPNT SLVVDGVQLP EVTEWGGNSP  900
TPKPPVEDWD PGLVSVSSLK PPEVLGDQVA TPASNADQLT HSSPPSNVIE FSTLAEESVS  960
DLLAEVDAME SQAQSGLGSP TSAMRCNVDL MQWSKSDFSS IEEMSPALGP AKSDAYSSTG  1020
DIQLPCQSPV TNELVRGGQT DGFDPSKRCN GHSSTSSEGE TKSTDVSFSK GHSGSEVRPH  1080
VPCTVSQNTV VSAMDQSRGS EAMVTAWGTT QGNANYGAPQ SVQGYANPGP GTSSKPAWRN  1140
PNTNRSAFNG NPAWDSQRRH AAERFPGPRD WAFQGGYSGH GRSRPAWNRQ SFSGGGGSGG  1200
GHSRPPPKTR VCKFYESGRC KKGASCDYLH P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409427RKKEYPLVCLKTPEERRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172252.10.0PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X1
TrEMBLA0A484LH900.0A0A484LH90_9ASTE; Uncharacterized protein
STRINGXP_009600608.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-137DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding