PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001453.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 402aa    MW: 45217.6 Da    PI: 5.5115
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001453.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.65.8e-091962340
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                             +r C+ +  k++++fC  ++ +lC++C ++ H+       H++v
  Itr_sc001453.1_g00002.1 19 ARACDSCLWKRARWFCVADDAFLCQSCDVSVHSAnllasrHQRV 62
                             578*****************************668888888876 PP
2CCT67.83e-23341384144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Itr_sc001453.1_g00002.1 341 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRA 384
                              9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4381764IPR000315B-box-type zinc finger
SMARTSM003363.8E-111764IPR000315B-box-type zinc finger
PfamPF006431.9E-71962IPR000315B-box-type zinc finger
CDDcd000211.73E-92064No hitNo description
PfamPF062039.4E-18341383IPR010402CCT domain
PROSITE profilePS5101716.043341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMSFDNQRKT ANAISGKTAR ACDSCLWKRA RWFCVADDAF LCQSCDVSVH SANLLASRHQ  60
RVRLGTSSSS SSTAATLLSS PKCNQVVAAD DDDDESPPAW HRGFTRKPRT PRNAKRTKKQ  120
NSGAGGGVAA EESVNPLLPL VPEMGSDDDY NNNEIDPEQL FCQVPVLLDD DLNALLNDSG  180
GDDHMRGLEI PEFLSSDMEL AEFAADVETL LGDDDVEDKA TAAVKIEING DDCTEALNWS  240
FGEEQEVEQK VMMRMLSGLD EESSSMESGS CKEEVKKSRM LLSLNYEEVI SAWASQGCPW  300
TDGTRPHFDP NHCWPDFMGG DHYNHHPYGT AMMMRRSDEG REARVSRYRE KRRTRLFSKK  360
IRYEVRKLNA EKRPRLKGRF VKRASLFQPP PPFPNYLLNR HL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351367RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168512.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD04e-81COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2G3A3841e-121A0A2G3A384_CAPAN; Uncharacterized protein
STRINGXP_009798338.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.12e-76B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]