PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001474.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 338aa MW: 37550.1 Da PI: 9.9

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001474.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.7e-10	17	63	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E++RR++++ + +L +l+P+ + +K + ++L +A++YIk+L+ Itr_sc001474.1_g00002.1 17 LMEKNRRQQMRGLYGRLASLVPHeK---SLEKSTACDVLDHATNYIKQLK 63 69*******************55...88999999**********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.258	10	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.84E-7	12	66	No hit	No description
SuperFamily	SSF47459	9.29E-13	12	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-13	14	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-8	16	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-7	17	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MQPNSSSLLP PRPRRHLMEK NRRQQMRGLY GRLASLVPHE KSLEKSTACD VLDHATNYIK 60 QLKNSINELK ARKDSLQLPV VIDVSESERG ESLEINIVYG LEKTKLMKMD KVFRILQEEG 120 AEVVSATNST VDLKIYHTII CKAFSPRIGM DTIRVQERKK KQNGTKGGRL TLSLWVVADD 180 DHELPSQGNS DHALFVFSLV DKVVAVGVGR KTKHNTKEMT KALKDQNTHF SGLVMATIGS 240 NNDGSIGESY KRTVSEVVMF ALLQSNNSLS SAHHFVSIKL TFRNYLFWRT QLIPLLRGQG 300 LLGHVDGSLQ CLSLAPPEEV PADGVSPTSA ALSHARDA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13045	3	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-16	bHLH family protein