PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001474.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 167aa    MW: 19092.2 Da    PI: 9.7615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001474.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-101763755
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                               E+ RR++++  + +L +l+P+     + +K    ++L +A++YIk+L+
  Itr_sc001474.1_g00003.1 17 LTEKHRRQQMRGLYRRLASLVPHeK---SLEKSPAFDVLDHATNYIKQLK 63
                             57*********************55...8899999*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8391062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-51668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-121677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-121781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-61862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-51966No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQPNCSSSLP PKPRRDLTEK HRRQQMRGLY RRLASLVPHE KSLEKSPAFD VLDHATNYIK  60
QLKNNINELK ERKDSLQLPV VIAVNESEGG ESLEINIVCG LEKKEVMKMH KVFRIIQEEG  120
AEVVSATNST VGLKIYHTII CKAFSPRIGM DTIRVQERLK NFISDLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181415.13e-97PREDICTED: uncharacterized protein LOC109176442
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-22bHLH family protein