PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001479.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 183aa    MW: 20985.3 Da    PI: 11.0743
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001479.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-1999132134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Itr_sc001479.1_g00002.1  99 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 132
                              99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-1693143IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2493129IPR000679Zinc finger, GATA-type
CDDcd002021.63E-1398145No hitNo description
SuperFamilySSF577161.28E-1498155No hitNo description
Gene3DG3DSA:3.30.50.101.0E-1498130IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS00344099124IPR000679Zinc finger, GATA-type
PfamPF003201.1E-1699133IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MFRTQTPIRI SENRALYLGK MIVAIKSNFI VPVGTRSKRM RSSKFNPWPF ISATFAYKNT  60
QSTKKKRERK LSQRSIAAKD IESDPCEQKG RQSFPVKKCL HCEVTKTPQW REGPMGPKTL  120
CNACGVRYRS GRLFPEYRPA ASPTFVPSLH SSSHKEVTEM RRKAGQEAVT HGECQPWLRT  180
HTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199324.11e-114PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_019199325.11e-114PREDICTED: GATA transcription factor 11-like isoform X2
RefseqXP_019199326.11e-114PREDICTED: GATA transcription factor 11-like isoform X3
RefseqXP_019199327.11e-114PREDICTED: GATA transcription factor 11-like isoform X3
TrEMBLA0A1J6JQ454e-53A0A1J6JQ45_NICAT; Gata transcription factor 11
STRINGXP_009795845.12e-53(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein