PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001484.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 566aa    MW: 62862.6 Da    PI: 6.9769
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001484.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.62.6e-114470935
                     GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                             TplWR+gp  ++ LCnaCG ++r kg+
  Itr_sc001484.1_g00003.1 44 TPLWRNGPPEKPILCNACGSRWRTKGT 70
                             ********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-43784IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-64374No hitNo description
Gene3DG3DSA:3.30.50.101.4E-74470IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.5E-94470IPR000679Zinc finger, GATA-type
CDDcd002022.74E-114484No hitNo description
PfamPF139192.8E-7311396IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGLSFKVELF NKLKWNLNVL LNVLPIPSCT AILDFSTSLV EKCTPLWRNG PPEKPILCNA  60
CGSRWRTKGT LANYTPLHAR AEPGDFEDYK VSRVRHIPVK NKEARFLKRR QNYDYAYAET  120
GIAPESSQGF RKSFDEDTSN RSSSGSAVSN SESSAQFGGT EVSDLTGPAQ PNIWDTTVPS  180
RKRTCLGRPK PSPVEKLTKD LYTILHEQQS SYLSGSSEED LLFESDRPMV SVEIGHGSVL  240
IRHPSSIGRE EESEASSLSV DYKQHSLNEA YLRFSTPSNK GANTPNVGSE RIKKPTGQGM  300
DQELVKRDKD QLEKLQILAH RDSPLCYIDL KEIVNFDEFT AHLSIEEQQQ LVKYLPIIDT  360
FAPPDSFKGM FESSQFKENL LSFQKLLADG VFDNSLSGVK VEDCRTLKRY ALCNLTNSKW  420
VEQRNHLEDV KCKNRIKGSE VAGESEVVGT GFSVNVKRPR DGQHLKLSGA NTVMKSPKRA  480
TNRFGSGHKE TADSDASCFT PKLLSALPSD YGFDSFGFIT ESSDQDLLLD VPSNSSFPQA  540
ELLPVSSLIA QASTGSSSVY HHLARP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156191.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-122GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A314L7K00.0A0A314L7K0_NICAT; Gata transcription factor 26
STRINGXP_009772103.10.0(Nicotiana sylvestris)
STRINGPGSC0003DMT4000675060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-126GATA transcription factor 26