PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001494.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 240aa    MW: 27286.2 Da    PI: 8.1046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001494.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.2e-083254326
                             S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                             +e Cr+f+r G+C  G+ C++aH+
  Itr_sc001494.1_g00002.1 32 QEACRRFSR-GQCIKGELCRYAHV 54
                             689******.*************6 PP
2zf-CCCH231.4e-0781100625
                              -SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                              C+ff+ + tC+yG++C+F H
  Itr_sc001494.1_g00002.1  81 CQFFLGGQTCPYGSKCRFLH 100
                              89777777************ PP
3zf-CCCH33.19.7e-11149173226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              kt+lC+ + ++G C+yG++C++aHg
  Itr_sc001494.1_g00002.1 149 KTKLCSMWEKMGRCWYGSTCTYAHG 173
                              89**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8962956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00542955IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-43355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7675103IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-575102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-676103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-680101IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-581100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-13142180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9144179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051147175IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4147174IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8149173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGDDESRKKP RSSEMHHLPV PSSDAGMRLD AQEACRRFSR GQCIKGELCR YAHVIGNVRE  60
TEGERGHWAV SQRRTERVNF CQFFLGGQTC PYGSKCRFLH ETSGNQGDSE FRETSAICIA  120
TNNDGRRPKR LTNDPRVRQN QNINPIWAKT KLCSMWEKMG RCWYGSTCTY AHGNAELRNV  180
DYPNPLDSSR GHDQDTASNN TESGTVQHGK QFLFKWTDVK KISQVYADWI DDDASGQDGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150142.11e-134PREDICTED: zinc finger CCCH domain-containing protein 39-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-24C3H family protein