PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001498.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 245aa MW: 25543.9 Da PI: 10.1452

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001498.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.5	4.9e-38	28	114	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +a+ + ss+s++ Itr_sc001498.1_g00011.1 28 VVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStiSASLRTSSSSAP 113 689******************************************************************87754222222222222 PP TCP 86 s 86 s Itr_sc001498.1_g00011.1 114 S 114 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.0E-34	34	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSTSVEANAG ALIDPQQLPS SGNGSLAVVK KPPAKDRHSK VDGRGRRIRM PIVCAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTIPASFST ISASLRTSSS SAPSLSASLD 120 HKPMAPAPFI LGKRLRTEED GLDDGNKEVV GSAAAGFWAA LPARPDFGQV WSFAAAAAAP 180 HEMVVPTPAA AAAALNSRFF QQQMGEASAA RVGNYLPMAQ GHLNLLASLS GTPPPSSGRR 240 DDDAR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163704.1	1e-157	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	6e-87	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A484KX08	1e-113	A0A484KX08_9ASTE; Uncharacterized protein
STRING	Solyc04g009180.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-77	TCP family protein