PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001499.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 228aa MW: 25347.6 Da PI: 9.2812

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001499.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.3e-40	27	85	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k++ lkcprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkk Itr_sc001499.1_g00002.1 27 KDQVLKCPRCNSANTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGGSRKNKK 85 7899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	26	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-34	28	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.217	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MRPMEEIVPI IENTSRGERK GIIRFQKDQV LKCPRCNSAN TKFCYYNNYS LSQPRYFCKS 60 CRRYWTAGGS LRNIPVGGGS RKNKKPLKKV ADLVPPVPIS GDHQSSSKIH GGEGHHQDLN 120 LGGQLSAMEL LTGFSTSIGL STAPFIFDPN LLYSQPGISL PQSKQCLKIC LDGIGNHQHH 180 HHLQPMQDTT TTNTRFLLPS DQDLRSTASD QDRDWNNGVL RGGGGESW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019160496.1	4e-92	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A2C9W9M7	2e-47	A0A2C9W9M7_MANES; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	6e-37	Dof family protein