PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001504.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 249aa    MW: 28102.7 Da    PI: 7.5275
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001504.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+ +++++G+g +W t ++++g++R++k+c++rw++yl
  Itr_sc001504.1_g00012.1 14 KGPWSPEEDAKLKSYIQLHGTGgNWITLPQKIGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding41.23.9e-1369111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc001504.1_g00012.1  69 GEFTEEEDNIICSLYITIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.37962IPR017930Myb domain
SuperFamilySSF466893.35E-2711109IPR009057Homeodomain-like
SMARTSM007172.4E-121364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-251569IPR009057Homeodomain-like
CDDcd001678.73E-101662No hitNo description
PROSITE profilePS5129422.15763117IPR017930Myb domain
SMARTSM007171.7E-1267115IPR001005SANT/Myb domain
PfamPF002499.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2470117IPR009057Homeodomain-like
CDDcd001678.18E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIQ LHGTGGNWIT LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEEEDNIIC SLYITIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGT  120
KLQPSQHHRP ADLYSLPQQT LPYYSDIHNQ PPSLSFKFQC PDDNDLQPHQ NPISATANTA  180
AFSSASSIFS VAASNSQLGF NSFPIELADD LFYGGYDQTQ ESFSYSMELH NLHQEMPPPN  240
ILEGPTYLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195591.11e-126PREDICTED: transcription factor RAX1-like
SwissprotQ9M2Y96e-78RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A1U7Z7C62e-80A0A1U7Z7C6_NELNU; transcription factor RAX3
STRINGXP_010248310.13e-81(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-74myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]