PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001509.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 194aa MW: 20850.7 Da PI: 10.6332

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001509.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	66.8	7.4e-21	1	123	38	135
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg..............kaaksaaksk 98 +LGfdk+skt++WLl ++ aik+l ++ +ss secea+s + ++++ a++++ k Itr_sc001509.1_g00008.1 1 MLGFDKASKTVDWLLLKSRLAIKDLKQQnhcaaagggasAASSTSECEAASGVLDQEFEPPMggdnvaaagklpkmGAKEKKGAAK 86 8*************************9999999977555555788888888888843333677777899999975555555778 PP TCP 99 ksqksaasalnlakesrakarararertrekmriknk 135 + + a+++ l+kesr+kar+rarert+ km++kn+ Itr_sc001509.1_g00008.1 87 AAGRIRAAFHPLSKESRNKARERARERTKMKMKKKNN 123 888888889**********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.138	1	25	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-18	1	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	10.643	100	117	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MLGFDKASKT VDWLLLKSRL AIKDLKQQNH CAAAGGGASA ASSTSECEAA SGVLDQEFEP 60 PMGGDNVAAA GKLPKMGAKE KKGAAKAAGR IRAAFHPLSK ESRNKARERA RERTKMKMKK 120 KNNMLGETPP PPQEMGGATH NVKTTNEPPP AAAAEELATS HNWSLSNIFH SHQIAKHLAL 180 RWQSSDSRLS GVRY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019189667.1	3e-71	PREDICTED: transcription factor TEOSINTE BRANCHED 1-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA34	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-07	TCP family protein