PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001518.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 29837.1 Da PI: 4.8289

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001518.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.9e-21	71	124	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+e+Le+ F ++++ e+++eLA++lgL rqV vWFqNrRa++k Itr_sc001518.1_g00007.1 71 KKRRLTSQQVEVLEKSFLGEKKVEGERKKELASNLGLHPRQVAVWFQNRRARWK 124 56689************************************************9 PP
2	HD-ZIP_I/II	112.8	2.2e-36	71	161	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kkrrl+++qv++LE+sF e+k+e erK+ela++Lgl+prqvavWFqnrRAR+k+kqlE+dy +Lk+++d l + + + k+++ L Itr_sc001518.1_g00007.1 71 KKRRLTSQQVEVLEKSFLGEKKVEGERKKELASNLGLHPRQVAVWFQNRRARWKAKQLERDYVQLKSSHDYLLCHYNFILKQNQML 156 9************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 ++e++ Itr_sc001518.1_g00007.1 157 KAEVN 161 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-18	56	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	66	126	IPR001356	Homeobox domain
SMART	SM00389	6.3E-18	69	130	IPR001356	Homeobox domain
CDD	cd00086	4.81E-16	71	127	No hit	No description
Pfam	PF00046	3.2E-18	71	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-20	73	132	IPR009057	Homeodomain-like
PRINTS	PR00031	3.0E-6	97	106	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	101	124	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.0E-6	106	122	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.0E-10	126	167	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MESGGFIFNP SSHADVLFLG KADPPFPGGS WSVMKMEESL KRRPSCLLSG SQSLVFDDEE 60 YYEEEQSSSD KKRRLTSQQV EVLEKSFLGE KKVEGERKKE LASNLGLHPR QVAVWFQNRR 120 ARWKAKQLER DYVQLKSSHD YLLCHYNFIL KQNQMLKAEV NLLSKKLEGN CKEVDDDDAP 180 RMKVVEEECG SPKQQQQLMD NYYYCVGGTW KTSNTNNNNF QNEDYEEEDM DHHVCNSLPH 240 AQTTTDDDDE PLGWFWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	126	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161314.1	1e-131	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X4
Swissprot	Q02283	8e-44	HAT5_ARATH; Homeobox-leucine zipper protein HAT5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7891	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-40	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]