PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001543.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 237aa MW: 25819.9 Da PI: 9.8117

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001543.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Itr_sc001543.1_g00010.1 61 FACNYCRRKFYSSQALGGHQNAH 83 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.08E-6	57	89	No hit	No description
PROSITE profile	PS50157	11.344	61	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MESRQEEREK DQEVEGEERR GGVLLDLSLS RRESSDKTPP APADEFRGPK ASSETTEPRV 60 FACNYCRRKF YSSQALGGHQ NAHKRERTMA KRGQKMLAAA AAFGYDAPMH RYPSMASLPL 120 HGSFNRSLGI QAHSMIHKPA GGYFGAPAAG AGPQPIYGFN GWPRRPLNQQ PAVGRLPTEC 180 LGSSSNSGAA RFDSEAKFPP VVDGGIRWDS VGRGGGASHI KINNQDELNK LDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167337.1	1e-146	PREDICTED: zinc finger protein 3-like
Refseq	XP_019167338.1	1e-146	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A1S3ZJR7	4e-68	A0A1S3ZJR7_TOBAC; zinc finger protein 3-like
STRING	XP_009623268.1	1e-68	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	1e-40	zinc finger protein 3