PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001545.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 1062aa MW: 117371 Da PI: 8.0878

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001545.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	138	215	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Itr_sc001545.1_g00007.1 138 MCQVDNCKENLTNAKDYHRRHKVCEVHSKASKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNKRRRKTQP 215 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-33	133	200	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.804	136	213	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-37	137	217	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-29	139	212	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.31E-5	811	949	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.81E-4	857	952	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence Send to blast
MEDLSGRVAS PIMIHHQSLA GGLCDPRSVP KKRGLSFQPS TQKRDSWNPR AWEWDSARFV 60 AKPVVESDAR PELRRRSQEQ LKEQNFNNNN NKPICVVEDD ETLTLNLGGS VLNSAEEALS 120 RPSKRVRSGS PNTSNYPMCQ VDNCKENLTN AKDYHRRHKV CEVHSKASKA LVGKQMQRFC 180 QQCSRFHPLS EFDEGKRSCR RRLAGHNKRR RKTQPEETTS RPMLPGSNDA PGNRDLDIVN 240 LLAVIASAQG NNEKRSTNLS SLPDKDQLMQ ALSKINSLPL PANVVDKLPI SGSLNGTNGN 300 QLPSSCKARE NTASPSTRDL LTALSAASAG AASDAVDVQS QRSSQGSDSE RSKSACVGHD 360 TRINFQNRPP LELSSVGGEK SSTSYQSHED LDSNIQETHH NLPLRLFTSP AEDVSTHTPP 420 VGRKYFSSES SNPSAGRSPS SSPPVVQKLF PVQDSRGSTN PDRIFASREE NRNVKETKTN 480 GCITSFQLFG GLITGADSYS IQSSPYQTGY TSSSGSDHSP SSLNSDAQDR TGRIMFKLFD 540 KDPSHLPGSL RTQIYHWLSN IPSEMESHIR PGCIVLSLYL SMPSPLWEQL EENLFQYVKA 600 LIKDVDPQFW ASGRFMVRTD KRLASHNDGN IHVYKSRRAW RSPKLMCVSP LAVVGGQEIS 660 LTLRGTNLNF PGTKIYCTDA GGYRISWAKT STWQDTACEE IILGNFMIHG TAPSVLGRFF 720 IEVENGIRGT SFPIIVADNA VCEELRCLES DISEAENVRG AALGHGNPGF EMSRSKEVVH 780 FLNELGWLFQ RKRSSSFESR DFKIIRFKFL LIFSVEHDFC ALVKTLLGIL LEINLAMKGL 840 ENESLQMLLE LQLLSRAVKR KCKDMVDLLI NFSVSVPGHN LKYIFLPNLP GPGGITPLHL 900 AACTANSDDV VDSLTSDPQE IGLHCWNSLL DENGLSPNAY ALMRNNHSYN NLVSQKLANR 960 ENGHVSVSIG GEIDQLEMDE DHNKQAFQVD QGPKSCSKCA AAAMRHTRRG VPGSQGLLYR 1020 PYIHSMLAIA AVCACVCVFF RGAPDIGSVA PFKWENLDFG PL

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence Send to blast

MEDLSGRVAS PIMIHHQSLA GGLCDPRSVP KKRGLSFQPS TQKRDSWNPR AWEWDSARFV  60
AKPVVESDAR PELRRRSQEQ LKEQNFNNNN NKPICVVEDD ETLTLNLGGS VLNSAEEALS  120
RPSKRVRSGS PNTSNYPMCQ VDNCKENLTN AKDYHRRHKV CEVHSKASKA LVGKQMQRFC  180
QQCSRFHPLS EFDEGKRSCR RRLAGHNKRR RKTQPEETTS RPMLPGSNDA PGNRDLDIVN  240
LLAVIASAQG NNEKRSTNLS SLPDKDQLMQ ALSKINSLPL PANVVDKLPI SGSLNGTNGN  300
QLPSSCKARE NTASPSTRDL LTALSAASAG AASDAVDVQS QRSSQGSDSE RSKSACVGHD  360
TRINFQNRPP LELSSVGGEK SSTSYQSHED LDSNIQETHH NLPLRLFTSP AEDVSTHTPP  420
VGRKYFSSES SNPSAGRSPS SSPPVVQKLF PVQDSRGSTN PDRIFASREE NRNVKETKTN  480
GCITSFQLFG GLITGADSYS IQSSPYQTGY TSSSGSDHSP SSLNSDAQDR TGRIMFKLFD  540
KDPSHLPGSL RTQIYHWLSN IPSEMESHIR PGCIVLSLYL SMPSPLWEQL EENLFQYVKA  600
LIKDVDPQFW ASGRFMVRTD KRLASHNDGN IHVYKSRRAW RSPKLMCVSP LAVVGGQEIS  660
LTLRGTNLNF PGTKIYCTDA GGYRISWAKT STWQDTACEE IILGNFMIHG TAPSVLGRFF  720
IEVENGIRGT SFPIIVADNA VCEELRCLES DISEAENVRG AALGHGNPGF EMSRSKEVVH  780
FLNELGWLFQ RKRSSSFESR DFKIIRFKFL LIFSVEHDFC ALVKTLLGIL LEINLAMKGL  840
ENESLQMLLE LQLLSRAVKR KCKDMVDLLI NFSVSVPGHN LKYIFLPNLP GPGGITPLHL  900
AACTANSDDV VDSLTSDPQE IGLHCWNSLL DENGLSPNAY ALMRNNHSYN NLVSQKLANR  960
ENGHVSVSIG GEIDQLEMDE DHNKQAFQVD QGPKSCSKCA AAAMRHTRRG VPGSQGLLYR  1020
PYIHSMLAIA AVCACVCVFF RGAPDIGSVA PFKWENLDFG PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	129	212	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187445.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Refseq	XP_019187446.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
TrEMBL	A0A061FG27	0.0	A0A061FG27_THECC; Squamosa promoter binding protein-like 14
STRING	EOY15863	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14