PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001550.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 242aa    MW: 26926.8 Da    PI: 8.7714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001550.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.2e-1546127171
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkke 71 
                              +fY++YA +vGF++r s+  ks r+g++++++ vCs+eg++++  ++            ++  +r+r+++rtgC+a+++ k +
  Itr_sc001550.1_g00002.1  46 EFYKNYAAKVGFDTRFSSVVKS-RDGTTVTKHIVCSREGFKNSGVQHsnsksntdagegSSIPKRRRVSNRTGCRARIVFKYK 127
                              6********************9.77779999**********9998887888888888877777889************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1246127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSPNKNSDAC SLSISLEMTQ YWTPHCEDEI KPLVGMSFTT LESATEFYKN YAAKVGFDTR  60
FSSVVKSRDG TTVTKHIVCS REGFKNSGVQ HSNSKSNTDA GEGSSIPKRR RVSNRTGCRA  120
RIVFKYKLEV LVMRYSMVFT PFIGVGNHKK CVTFGAGLLL KEDIVICHID AKNNIDNEGY  180
VPELKTLLGL EKHASTLYTI TVFYQIQVEI CASCFTYRVL SVREDTGLAG EISSRLCLGN  240
SK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178624.12e-60PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.19e-12FAR1-related sequence 12