PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001562.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 165aa    MW: 17484.6 Da    PI: 10.7916
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001562.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-193266135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Itr_sc001562.1_g00001.1 32 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 66
                             ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5452662IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-152676IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-132866No hitNo description
Gene3DG3DSA:3.30.50.101.2E-153166IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.49E-133166No hitNo description
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PfamPF003204.6E-173266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MADLSDRGSE SEEMNNQAQT PESETSTQIK TCADCGTTKT PLWRGGPAGP KSLCNACGIR  60
SRKKRRALLG LNKDDKKSKK AAAAGNKNNQ NSSNNSGTTS DSGSSSGGAK SGVPQALRRK  120
LVPPFGIGRE VALQRPRSQQ QRRKLGEVER AAFVLMSLSC GSVYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177663.18e-75PREDICTED: GATA transcription factor 16-like
TrEMBLA0A1U8GLM33e-58A0A1U8GLM3_CAPAN; GATA transcription factor 15-like
TrEMBLA0A2G3CIE33e-58A0A2G3CIE3_CAPCH; GATA transcription factor 23
STRINGXP_009590421.11e-56(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-28GATA transcription factor 15