PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001564.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 192aa    MW: 21518.6 Da    PI: 9.2013
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001564.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32113171159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Itr_sc001564.1_g00002.1 113 LDDGYKWRKYGQKSVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDKSIVVTTYEGIHNHP 171
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32100171IPR003657WRKY domain
SuperFamilySSF1182904.58E-28105172IPR003657WRKY domain
PROSITE profilePS5081128.311108173IPR003657WRKY domain
SMARTSM007745.6E-36113172IPR003657WRKY domain
PfamPF031062.2E-25114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEGEEPTPAP PSLPALLANG DINIQDLFSF PSTSVVEHNN PSIMLSHLPI QSSVVGSDSI  60
DWVGLLSGCM DQMAAPAPAS RGGENCVQKN KGKRKKYVPP RVAFHTRSTE DILDDGYKWR  120
KYGQKSVKNS THPRSYYRCT HHTCNVKKQI QRLSKDKSIV VTTYEGIHNH PCEKLMETLT  180
PLLKQLQFLS RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-24101170271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160501.11e-120PREDICTED: probable WRKY transcription factor 43
SwissprotQ8VWQ45e-57WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A1S4C5P09e-71A0A1S4C5P0_TOBAC; probable WRKY transcription factor 45
STRINGXP_009598201.13e-71(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.14e-59WRKY DNA-binding protein 56