PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001565.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 198aa MW: 22383.8 Da PI: 4.8071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001565.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	117.8	1.1e-36	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ ++ +e ++wyf+s+r +r+t++gyWka Itr_sc001565.1_g00004.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLEGRAMGEGNKWYFYSRRTA--------SRITSNGYWKAL 84 79***********************999.99**********977778899**9854........799***** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g d++++ + +g+ vg+k+ +fy g+ p+gekt+Wvm+eyrl Itr_sc001565.1_g00004.1 85 GGDEPIFPSsGGHRVGVKRCYAFYIGEPPQGEKTSWVMQEYRL 127 ***8868899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-49	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	46.351	8	166	IPR003441	NAC domain
Pfam	PF02365	4.2E-22	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGENSVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLEGRAMGE 60 GNKWYFYSRR TASRITSNGY WKALGGDEPI FPSSGGHRVG VKRCYAFYIG EPPQGEKTSW 120 VMQEYRLSAS PDSASASTTS AKSSSRRRTH SKNDYSKWVI CRVYDSNCDD DGDDGNELSC 180 LDEVFLSLDD LDEISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-39	4	167	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-39	4	167	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-39	4	167	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-39	4	167	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-39	4	167	16	169	NAC domain-containing protein 19
3swm_B	1e-39	4	167	16	169	NAC domain-containing protein 19
3swm_C	1e-39	4	167	16	169	NAC domain-containing protein 19
3swm_D	1e-39	4	167	16	169	NAC domain-containing protein 19
3swp_A	1e-39	4	167	16	169	NAC domain-containing protein 19
3swp_B	1e-39	4	167	16	169	NAC domain-containing protein 19
3swp_C	1e-39	4	167	16	169	NAC domain-containing protein 19
3swp_D	1e-39	4	167	16	169	NAC domain-containing protein 19
4dul_A	1e-39	4	167	13	166	NAC domain-containing protein 19
4dul_B	1e-39	4	167	13	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171608.1	1e-107	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	2e-84	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A068TMB6	1e-101	A0A068TMB6_COFCA; Uncharacterized protein
TrEMBL	A0A1J6IPU6	1e-101	A0A1J6IPU6_NICAT; Nac domain-containing protein 104
STRING	XP_009762857.1	1e-102	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-68	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]