PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001576.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 505aa MW: 54407.9 Da PI: 7.5426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001576.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.3e-09	331	378	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Itr_sc001576.1_g00004.1 331 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 378 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-10	325	382	No hit	No description
SuperFamily	SSF47459	4.84E-17	325	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	327	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	331	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MEKDYFLNGA TPPPPFPFSV PGWSSSDCIM NPNWDDSLDH YTQFESALSS MVSSPAASAV 60 SEGLAIRELI GKLGNICSSP PSFIASSAMA ASYSGNSDAN INVHSANTSC YSTPLSSPPK 120 LRLPSLGNHH PPPLPALSAD PGFAERAAKF SCFGSRSFNG RTSQLGLNTN SESPYRSAAP 180 LMGNARLPRV SSSPALKQAG SPVQNRNSGL SRAELKPANP LPPVPGSDAN SNEASSVSEQ 240 VPSTGSKSPN DLTSRKRKAP SRGKPKEDKG VEADNNNDPS LKRSKATEGN GSENGGNKTT 300 GDDSEKQSQK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV 360 TGKALMLDEI INYVQSLQRQ VEFLSMKLAS VNPRLDFNIP PKDICQPMCP LDSSLPTFHV 420 MHQHLQIPQQ QHTNGGVNQC QVDPLGMQLP PLDGFGETLS QFPLCDDDLQ SVVQMGLNQN 480 PTKDMALHNP QNYPAVSSPH MKMEL

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MEKDYFLNGA TPPPPFPFSV PGWSSSDCIM NPNWDDSLDH YTQFESALSS MVSSPAASAV  60
SEGLAIRELI GKLGNICSSP PSFIASSAMA ASYSGNSDAN INVHSANTSC YSTPLSSPPK  120
LRLPSLGNHH PPPLPALSAD PGFAERAAKF SCFGSRSFNG RTSQLGLNTN SESPYRSAAP  180
LMGNARLPRV SSSPALKQAG SPVQNRNSGL SRAELKPANP LPPVPGSDAN SNEASSVSEQ  240
VPSTGSKSPN DLTSRKRKAP SRGKPKEDKG VEADNNNDPS LKRSKATEGN GSENGGNKTT  300
GDDSEKQSQK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV  360
TGKALMLDEI INYVQSLQRQ VEFLSMKLAS VNPRLDFNIP PKDICQPMCP LDSSLPTFHV  420
MHQHLQIPQQ QHTNGGVNQC QVDPLGMQLP PLDGFGETLS QFPLCDDDLQ SVVQMGLNQN  480
PTKDMALHNP QNYPAVSSPH MKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188718.1	0.0	PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBL	A0A140KER3	1e-164	A0A140KER3_9GENT; Uncharacterized protein
STRING	XP_009757727.1	1e-157	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-82	bHLH family protein