PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001584.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 401aa    MW: 45401.4 Da    PI: 4.6241
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001584.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.68.8e-1871373128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWka 85 
                               G+ F+Ptd+el+ +yL+  v gk+  +++++i+  d+y   eP+++    +++    y+F++  +k + g+r  r + ++g+Wk 
  Itr_sc001584.1_g00004.1   7 HGYIFKPTDKELM-QYLEGFVLGKPlKQTFDFIALEDLYGEkEPSEIF--GSGDPMTRYYFTELTRKCQGGSRFLRrVGDRGTWKG 89 
                              6999*********.9**********5555788*****996449****6..23344578***************9886888****** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfy.kgrapkge.....ktdWvmheyrl 128
                              +   +++ + +++++g +k+L +  k++++kg        +W+m+ey+l
  Itr_sc001584.1_g00004.1  90 QDAGHPIRV-RDKVMGFRKSLKYEtKKSKSKGGlsdrpGESWLMKEYSL 137
                              ********9.8999*********953344444333333678******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.2535160IPR003441NAC domain
SuperFamilySSF1019412.35E-217159IPR003441NAC domain
PfamPF023654.6E-117137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MARPSLHGYI FKPTDKELMQ YLEGFVLGKP LKQTFDFIAL EDLYGEKEPS EIFGSGDPMT  60
RYYFTELTRK CQGGSRFLRR VGDRGTWKGQ DAGHPIRVRD KVMGFRKSLK YETKKSKSKG  120
GLSDRPGESW LMKEYSLSND YLRDKHVVLK DVVLCRIRRR VVRSTSRSSE SSTLNINEND  180
TPLEIYNWPE NDDVTVSPPP SQTPTLAAAA AAEVSSGVDD ANGGVIAMDN HTLQVDEFNE  240
LDELLRRLEN DDVTLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXAAA QVSSGVDDAY GGVIAMENDT LQLDEWDQLL KTPENESLPP  360
SETSTLTAAV FSSGVDELDE LLKKTAPHDV LEDYNFWNFK A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163553.11e-114PREDICTED: NAC domain-containing protein 78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-13NAC domain containing protein 2