PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001598.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 445aa    MW: 50559.7 Da    PI: 5.9293
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001598.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.31.8e-31151472101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............. CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............. 74 
                              F+ k+ye+++d+++++++sws+n++sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+Y      +++++ ++             
  Itr_sc001598.1_g00007.1  15 FIAKTYEMVDDSSTDSIVSWSQNNKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYTILVFLSDKETCSHyprcalgksrltd 100
                              9***********************************************************9888888877666899********** PP

                              ....................XTTSEEEEESXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  75 ....................kekiweFkhksFkkgkkellekikrkk 101
                                                  +++ weF+++ F +g+ +ll++i+r+k
  Itr_sc001598.1_g00007.1 101 lvlisharfislvnqgfkkvDPENWEFANDDFVRGEPHLLKNIHRRK 147
                              ****999999988877765449***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-4911146IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.86E-311180IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-351281IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-141538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-2815146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-145365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-146678IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.86E-31113146IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-35114146IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMDEDPCSIN ALPPFIAKTY EMVDDSSTDS IVSWSQNNKS FVVWNPPEFA RDLLPRFFKH  60
NNFSSFIRQL NTYTILVFLS DKETCSHYPR CALGKSRLTD LVLISHARFI SLVNQGFKKV  120
DPENWEFAND DFVRGEPHLL KNIHRRKPVY SHSAQNLHSH SSSLSESERR KYKDDIEKLR  180
REKELLQSEL ERHVQDQRGL ELELERVAEL LRDAEKQQKS MLSSLARALD KPELALGLVP  240
QSALPCRKRR LLGNSNLHDE TAMTDTQPSS SRHLARENTS SISLVTLNKL LDQLESSLIF  300
WDNILQDVAQ TELDESRLCA DSPAISYTQL NADTAANTRG IDMNSEPNAS PLLEAIPPIP  360
QQQAAVPGTV TNAPTRVNDV FWEQFLTENP GSSNVSQVQQ ERKDLDAKKG ENDPVNHKKL  420
WRSMKNVNIN SLAEQLEHNA PAEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-171214626129Heat shock factor protein 1
5d5v_B4e-171214626129Heat shock factor protein 1
5d5v_D4e-171214626129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169382.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169383.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169384.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169385.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169387.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169388.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169389.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169390.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019169391.10.0PREDICTED: heat stress transcription factor A-4c
TrEMBLA0A314L5061e-168A0A314L506_NICAT; Heat stress transcription factor a-4a
STRINGXP_009796383.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.19e-82heat shock transcription factor A4A