PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001610.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 170aa MW: 18952.5 Da PI: 6.4292

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001610.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.1	2.8e-08	72	107	56	91
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 rtgC a ++ + +g+w vtk e+ HnHel++ Itr_sc001610.1_g00005.1 72 IDLRTGCVAFVQFDVDGNGVWTVTKHEKSHNHELCT 107 5679******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-6	73	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MAEAVDQLVN ADLVVVSASI DQGDLIVEDS SSIPVDHDLV GIVVSNADEA YELYNDYAYR 60 VVLVLGRAYS KIDLRTGCVA FVQFDVDGNG VWTVTKHEKS HNHELCTLDK SHLLRSHRRV 120 KNNQLSYLRD LKKNGVALAD GIRFLKHQSG GLHSLGSPIE MLTIHWHLIH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188786.1	8e-70	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14143	2	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-08	FAR1-related sequence 5