PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001618.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 235aa MW: 27206.7 Da PI: 9.1613

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001618.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.7	2e-13	11	99	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv+ + +++ rl lp +++ +++k + +++l+ ++ s++vk+ + ++++ +t+GW eFv+++g+ +Df vFk++g Itr_sc001618.1_g00010.1 11 FFKVM--KPGFQT-RLKLPPIMCTKLNENK--PEEVVLTG-QNGSFKVKI--QECKDQkLCFTEGWDEFVRQHGIALKDFAVFKHIG- 89 77777..555555.69*****9997665..55788877.5669*..555555599*********************988. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +f+++v +f+ Itr_sc001618.1_g00010.1 90 -SFHFTVILFD 99 .6655776665 PP
2	B3	41.9	1.8e-13	145	228	14	95
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +p+kf +++++ ++ +tl+ + g+ W k++ + ++ + + +GWkeF+ +Lke+D++ F++++r + +++v Itr_sc001618.1_g00010.1 145 PYMLIPRKFSRSNNLLMNTILSITLRGPCGKIWPAKFRSygKTYG-GyACILDGWKEFAMHYDLKERDVCSFQFIRRPSYSFMVD 228 4689*******555555568***********55443333.3456667********************9977767776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.839	8	101	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.06E-16	9	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.44E-12	9	99	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.8E-17	10	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.1E-9	11	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.8E-11	11	99	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.1E-14	127	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.02E-17	127	227	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.0E-7	130	233	IPR003340	B3 DNA binding domain
CDD	cd10017	5.86E-16	130	229	No hit	No description
PROSITE profile	PS50863	10.87	132	233	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-10	145	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEHNLPIGWH FFKVMKPGFQ TRLKLPPIMC TKLNENKPEE VVLTGQNGSF KVKIQECKDQ 60 KLCFTEGWDE FVRQHGIALK DFAVFKHIGS FHFTVILFDL TCCQKDVHVN PETSNDSGKD 120 LCTGQENSMC FTTTIKAYNV RRRSPYMLIP RKFSRSNNLL MNTILSITLR GPCGKIWPAK 180 FRSYGKTYGG YACILDGWKE FAMHYDLKER DVCSFQFIRR PSYSFMVDVK ILPAC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175025.1	1e-132	PREDICTED: B3 domain-containing protein REM9-like
Refseq	XP_019175026.1	1e-132	PREDICTED: B3 domain-containing protein REM9-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	1e-20	B3 family protein