PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001623.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 319aa    MW: 36622.2 Da    PI: 4.8406
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001623.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.92.1e-30321232102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+++++ed+++++l+sws+ng+sfv++d+++fa ++LpkyF+hsn+aSF+ QLn YgF+kv++e+          e+++++F+
  Itr_sc001623.1_g00008.1  32 FLSKIFDMVEDPNTDSLVSWSSNGESFVIWDHNRFAAELLPKYFRHSNLASFIYQLNNYGFRKVNSER---------HEYENRWFR 108
                              9*****************************************************************99.........57******* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                               gkk+ l++i+ + +
  Itr_sc001623.1_g00008.1 109 PGKKDWLKSIRSRVQ 123
                              **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-3828121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3129115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-2730120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2732120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-183255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-188395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELVRMQTEI DSPLGCRDNA NIPVGLFATP RFLSKIFDMV EDPNTDSLVS WSSNGESFVI  60
WDHNRFAAEL LPKYFRHSNL ASFIYQLNNY GFRKVNSERH EYENRWFRPG KKDWLKSIRS  120
RVQKLKMLQK NGSFTAPVTE DLDVVMKKLK AEQMALRAEI QKLKEQQENM QKEFARAQEI  180
LENSDDDEER VISSFSLEFL QLVKRKAGAD NKPGGSSSGS GKKKKCDDEE VVIKCSDEGK  240
KEEEENARNA ENSAFWKKIF EDDSDAENGV EPLKDPKIMV ELDDMMASKI AMEEGQSLIS  300
KVAGLEGEED HEPHLQLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24171229130Heat shock factor protein 1
5d5v_B1e-24171229130Heat shock factor protein 1
5d5v_D1e-24171229130Heat shock factor protein 1
5d8k_B6e-25301223106Heat shock factor protein 2
5d8l_B6e-25301223106Heat shock factor protein 2
5d8l_D6e-25301223106Heat shock factor protein 2
5d8l_F6e-25301223106Heat shock factor protein 2
5d8l_H6e-25301223106Heat shock factor protein 2
5hdk_A5e-25291227111Heat shock factor protein 2
5hdk_B5e-25291227111Heat shock factor protein 2
5hdk_C5e-25291227111Heat shock factor protein 2
5hdk_D5e-25291227111Heat shock factor protein 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203224KRKAGADNKPGGSSSGSGKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198760.11e-176PREDICTED: heat stress transcription factor A-9-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-38heat shock transcription factor A9