PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001629.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 350aa    MW: 37250.2 Da    PI: 9.2247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001629.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31278335359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeH+h+
  Itr_sc001629.1_g00004.1 278 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHHHS 335
                              9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-16225274IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.6E-33264335IPR003657WRKY domain
PROSITE profilePS5081130.09271337IPR003657WRKY domain
SuperFamilySSF1182901.83E-26273335IPR003657WRKY domain
SMARTSM007742.5E-36276336IPR003657WRKY domain
PfamPF031061.4E-26278334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAVELMMGYG NDGFAVKIEE SAVQEAATAG LKSVENLIRL LSNSPECGGG FSASVSETPA  60
PEAEFQAAAL ANVAVTKFKK FISLLDRTRT GHARFRRGPV EDRAGLDGKK IDQEPEPEPA  120
APAADASEKP LSGSKIYCPT PIQRLPPLPH HHFVKNGSAA NDRKESSTTI SFSGAAASPA  180
GSFISSLTGD TDTLQPSLSS GFQITNLSQV SSAGGRPPLS TSSLKRKCNS MDDVTLKCGS  240
AGGSASGRCH CPKKRKSKVK RVVRVPAISL KMADIPPDEY SWRKYGQKPI KGSPHPRGYY  300
KCSSVRGCPA RKHVERALDD PTMLIVTYEG EHHHSHSIAD PPAAMILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20264334271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156479.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_019156480.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_019156481.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX03e-97WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLC7ENF81e-164C7ENF8_IPOBA; WRKY1
STRINGXP_009604893.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-76WRKY DNA-binding protein 7