PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001662.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 725aa    MW: 80423.5 Da    PI: 5.9268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001662.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.93.1e-1333577241374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.....svselykalppsetseknsseelaal 81 
                              l +lLl cAeavs+++  la+++L +l+  ++p gd+mqR+a++fteAL+arla      s +++++  p ++  + ns e l+++
  Itr_sc001662.1_g00013.1 357 LLHLLLVCAEAVSKENYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlasaSAKSISSNRPFNPPYPPNSLEILKIY 442
                              579*************************************************98731112234444444555555566******** PP

                     GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                              +++++++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L++
  Itr_sc001662.1_g00013.1 443 QILYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTE 524
                              ********************************************************************....9************* PP

                     GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                              +A++l+vpfef++ v ++l+dl++++++ + gEalaVn v +lhr++  + ++ +    +L ++++  P++v++veqea+hn++ F
  Itr_sc001662.1_g00013.1 525 LAHSLHVPFEFHP-VGEELQDLKPHMFNRRVGEALAVNAVNRLHRVP--PNCMGN----LLGMIRDQAPNIVTIVEQEANHNGPYF 603
                              *************.7*******************************9..666666....*************************** PP

                     GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                              l rfleal+yysa+fdsl+a++p++s++r+kvE+ ++++ei n+vacegaer+ rhe+le+Wr+ +e  GFk vpls +a++q + 
  Itr_sc001662.1_g00013.1 604 LGRFLEALHYYSAIFDSLDATFPADSSQRAKVEQYIFAQEIWNIVACEGAERVYRHERLERWRRVMEGKGFKGVPLSANAVTQSNI 689
                              ************************************************************************************** PP

                     GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ll  ++ dgyr+ e++g+l+lgW+drp++++SaWr
  Itr_sc001662.1_g00013.1 690 LLGLYSCDGYRLTEDKGCLLLGWQDRPILAASAWR 724
                              **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.357331704IPR005202Transcription factor GRAS
PfamPF035141.1E-130357724IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MMLNTLCGSM GSLSSEVGNL KIEEEPSSVK RENSSLLSSS SSSSTLQHQS DKVPIPVPAP  60
SDYEDHSSVV NGISFPAIKF EVPGGGDDIG IDDQSYWDWE SFFADQLEGD FMISSPVRSN  120
NMAASPQVSS FMNDVQMMIT SPVRNCYHHH QNGITMSPPR MMMMSPLGPG HNNNNNNKGK  180
GLSPLHRVFN SPNAQHLMQM QTHDFSHLPA LDNLLDFDDN HDFSSSYSST LKHLPASTSV  240
LSESLLDCGG LQLPRLHSSS SCSASVSSIQ APPLEADDDI IYRTTTTTTG SLHIAPLSHQ  300
LREERNQEQQ HHHNNNNNNI TRSGQHLHSA PLVLPLSAPP ADLQEEEEEE QDSGLQLLHL  360
LLVCAEAVSK ENYMLARRYL HHLNRVVTPL GDSMQRVASC FTEALSARLA ATLASASAKS  420
ISSNRPFNPP YPPNSLEILK IYQILYQACP YVKFAHFTAN QAIFEAFEAE ERVHVIDLDI  480
LQGYQWPAFM QALAARPGGA PFLRITGVGP SPEAVRETGR CLTELAHSLH VPFEFHPVGE  540
ELQDLKPHMF NRRVGEALAV NAVNRLHRVP PNCMGNLLGM IRDQAPNIVT IVEQEANHNG  600
PYFLGRFLEA LHYYSAIFDS LDATFPADSS QRAKVEQYIF AQEIWNIVAC EGAERVYRHE  660
RLERWRRVME GKGFKGVPLS ANAVTQSNIL LGLYSCDGYR LTEDKGCLLL GWQDRPILAA  720
SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-973387231377Protein SCARECROW
5b3h_D3e-973387231377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183968.10.0PREDICTED: protein SCARECROW-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1S4C8Z10.0A0A1S4C8Z1_TOBAC; DELLA protein RGL2-like
TrEMBLA0A1U7YX550.0A0A1U7YX55_NICSY; DELLA protein RGL2-like
STRINGXP_009803754.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-94RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]