PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001686.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 64aa    MW: 7158.18 Da    PI: 8.2184
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001686.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.4e-1024601348
                             HHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEE CS
                   SRF-TF 13 fskRrngilKKAeELSvL.Cdaevaviifsstgklye 48
                             f  Rr+g++KKA EL  L  ++++a ++fs+ g+ y 
  Itr_sc001686.1_g00001.1 24 FHERRKGLFKKAAELGCLiPEVRIAAVVFSPAGNPYV 60
                             889************666269***********98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.15E-92262IPR002100Transcription factor, MADS-box
PfamPF003192.1E-112461IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
LSWAKGSEDS DQENRVFAGP KCLFHERRKG LFKKAAELGC LIPEVRIAAV VFSPAGNPYV  60
FEYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.17e-08AGAMOUS-like 28