PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001687.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 239aa MW: 27420.9 Da PI: 9.4535

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001687.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.5	1.8e-11	21	100	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l lp +++ ++kk+ + +l ++ s++vk+ + ++++ +tkGW +Fv +ng+ +Df vF+++g +f++ v +f+ Itr_sc001687.1_g00008.1 21 TSLDLPPIMCKKLNEKKQ--EEAVLIG-QNGSFKVKI--QECKDQgLCFTKGWDDFVGQNGIAFKDFAVFEHMG--SFHFSVVLFD 99 458899999999876644..4788888.55699**..665555599*********************887..6766888777 PP S CS B3 99 k 99 + Itr_sc001687.1_g00008.1 100 Q 100 5 PP
2	B3	40.9	3.6e-13	132	225	3	89
EE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-EE CS B3 3 kvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDfv 80 ++++++++l++ ++ ++pkkf ++++ +s+ +tl+ + g++W kl+ + ks++ + +GWkeF+ +Lk++D++ Itr_sc001687.1_g00008.1 132 TTTIKAYNLRRgvdfNLQYIPKKFSLSNNLL--KSTNITLRGPCGKTWPAKLKSrggKVKSKAyACILDGWKEFAMYYHLKVRDVC 215 5566666666666656679***9999888..5678***********77565444444645557************* PP EEEE-SS.SE CS B3 81 vFkldgr.se 89 F++++ ++ Itr_sc001687.1_g00008.1 216 SFRFIRLpTS 225 *9875454 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-13	10	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0016	11	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.9E-13	11	103	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.7E-9	20	100	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.177	49	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.0E-17	126	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.49E-16	128	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.14E-14	130	230	No hit	No description
SMART	SM01019	1.8E-6	130	236	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.546	134	234	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.8E-10	149	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEHNLPIGWR FFKIMGWGFH TSLDLPPIMC KKLNEKKQEE AVLIGQNGSF KVKIQECKDQ 60 GLCFTKGWDD FVGQNGIAFK DFAVFEHMGS FHFSVVLFDQ TCCQKDLHPN PETCHEGGKN 120 WCTGQENSSC FTTTIKAYNL RRGVDFNLQY IPKKFSLSNN LLKSTNITLR GPCGKTWPAK 180 LKSRGGKVKS KAYACILDGW KEFAMYYHLK VRDVCSFRFI RLPTSYSFMV DVKKILPVN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175025.1	1e-118	PREDICTED: B3 domain-containing protein REM9-like
Refseq	XP_019175026.1	1e-118	PREDICTED: B3 domain-containing protein REM9-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-16	B3 family protein