PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001699.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 159aa    MW: 18151.3 Da    PI: 5.3589
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001699.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-10911232355
                              SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Itr_sc001699.1_g00002.1  91 PYPTEEEKNKLSEATGLDQKQINNWFINQRKRH 123
                              8*****************************885 PP
2ELK37.93.8e-134464222
                      ELK  2 LKhqLlrKYsgyLgsLkqEFs 22
                             +K++L+rKYsgyL+sL++EF+
  Itr_sc001699.1_g00002.1 44 IKEMLMRKYSGYLSSLRKEFL 64
                             8*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011882.2E-64364IPR005539ELK domain
PROSITE profilePS5121310.584363IPR005539ELK domain
PfamPF037893.1E-104464IPR005539ELK domain
PROSITE profilePS5007112.66563126IPR001356Homeobox domain
SuperFamilySSF466893.85E-1965134IPR009057Homeodomain-like
SMARTSM003898.2E-1365130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-2768128IPR009057Homeodomain-like
CDDcd000868.33E-1379127No hitNo description
PfamPF059201.2E-1783122IPR008422Homeobox KN domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLANYISVLS DEAGGTSEED LSCGEVEVAE SQDYVNNSEG DQQIKEMLMR KYSGYLSSLR  60
KEFLKKRKKG KLPKDARVAL LDWWNSHYRW PYPTEEEKNK LSEATGLDQK QINNWFINQR  120
KRHWRPSEDM RFALMEGVSG DVAGSMYFDA GGGTGNLGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15867LRKEFLKKRK
26468KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0160020.0AB016002.1 Ipomoea nil PKn3 (knotted-like gene) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188030.17e-97PREDICTED: homeobox protein knotted-1-like 1 isoform X2
SwissprotA2Y0071e-53KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL51e-53KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLO804112e-91O80411_IPONI; Pharbitis kntted-like gene 3
STRINGSolyc01g100510.2.11e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-39KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]