PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001700.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 233aa    MW: 27151.7 Da    PI: 9.1029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001700.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.52.8e-1581232106
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                              p G+ F+Ptd el+  yL++ v+gk++  +  i e+d+y+  eP+++ k  +++ek +y F++  +++++++r  r+++  +g+Wk
  Itr_sc001700.1_g00010.1   8 PDGYIFRPTDTELL-SYLAQYVTGKSVLSTVPIVEIDLYNGeEPSEIFK--RSREKVMYIFTTLIRRSSSDSRYIRTIRggKGTWK 90 
                              78************.9**********777456******98659****63..4577899******************87766899** PP

                      NAM  85 atgkdkevlsk.......kgel......vglkktL 106
                              a+ + k+++++       +  +      +g k++L
  Itr_sc001700.1_g00010.1  91 AQDRGKPIYRRygnddhdD--NqqlrqlIGYKRSL 123
                              **********976655441..13344557777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-135123IPR003441NAC domain
PROSITE profilePS5100514.5017189IPR003441NAC domain
PfamPF023657.7E-78124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERQEHIPDG YIFRPTDTEL LSYLAQYVTG KSVLSTVPIV EIDLYNGEEP SEIFKRSREK  60
VMYIFTTLIR RSSSDSRYIR TIRGGKGTWK AQDRGKPIYR RYGNDDHDDN QQLRQLIGYK  120
RSLSCVEIVS SVWNYSCVEL ILQLKENGSR FIRLCVDHDP HNNDCRFNPS YRLRHRPLND  180
TVLCRIKRKQ NNRDIMGFES GSIEEARNIG DIIGKLRKST TSSEVNSLLE TSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193824.17e-86PREDICTED: NAC domain-containing protein 101-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-06NAC-domain protein 101