PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001728.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 60aa MW: 6764.52 Da PI: 10.3588

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001728.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00035	19	43	14	41
HHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 14 driNsafeeLrellPkaskapskKlsKa 41 d+iN+ ++L+++lP++ +++ +Ka Itr_sc001728.1_g00004.1 19 DQINDLVSKLQQVLPEL---RNRSSDKA 43 79**************8...77766665 PP

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MSSRRSRSRQ SGPSNMSDDQ INDLVSKLQQ VLPELRNRSS DKAKLELKDV DGPIKSSTNY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	5e-08	bHLH family protein