PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001750.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 599aa    MW: 66996 Da    PI: 6.8495
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001750.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-085225601854
                              HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Itr_sc001750.1_g00002.1 522 MFQNflHPYPKDTEKHLLAVKSGLTRSQVSNWFINARVR 560
                              5887779******************************88 PP
2BELL74.81.3e-24389457370
                     BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgs.akpYtslAlkaiSrhFrcLkdaiae 70 
                               + + k+ +Ll ll+ Vd+rY+q+ ++l++v+s+F+av++l +   ++t++Al+++S+ +++L+++i+ 
  Itr_sc001750.1_g00002.1 389 VDAETKRKHLLALLQAVDDRYSQCLDELHMVVSAFHAVTELHHpTSIHTHFALQTVSFLYKNLRERIST 457
                              67899***********************************9862679********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.0E-22310457IPR006563POX domain
PfamPF075267.8E-25316456IPR006563POX domain
PROSITE profilePS5007110.997501564IPR001356Homeobox domain
CDDcd000861.01E-10504565No hitNo description
SMARTSM003894.1E-5504568IPR001356Homeobox domain
SuperFamilySSF466894.28E-15506573IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25507570IPR009057Homeodomain-like
PfamPF059201.9E-14521560IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MTRKDMVLSR PIDMADHSPI VADEYLLPPT NFVSIDCPDW INLSNQNENQ NENQIMDGHG  60
MSLPSVLQGE AMNSFVSVAN FSQPVNCETV KDLSVGSSYP INGAPQIQND FLRERTPLSA  120
VSLAYLLAAR NGAYENPEKF EASAATLPYS TQVTRGLGSN SYSDIFNPSC GSLANHEFSV  180
LPVDMSRKCD FDKSNAPPEI MGTVMGRTTG SQPFQLPGNI NPGVWFSAER ASSSSSSPSG  240
SSRFSNELSL SLTTTPPQVA CGTSIQDQFS ELSCSGVTSN PFRERAFGLE QAPCTGNKNL  300
SLNFDSYKPV QLSQFLSGSR YLAVMQEILS QIAKYSLENL NSISYPTNLT DDGEHSPFSL  360
SCSAGTGRSL AVLGADPFPY GAHRTINRVD AETKRKHLLA LLQAVDDRYS QCLDELHMVV  420
SAFHAVTELH HPTSIHTHFA LQTVSFLYKN LRERISTFIL AMGEQYSSSS SSTRNAREEK  480
SFEASFIQKQ WTLQQLRKKD HQLWRPQRGL PERSVSVLRA WMFQNFLHPY PKDTEKHLLA  540
VKSGLTRSQV SNWFINARVR LWKPMIEEMY AEMNRRNHNH NHNHHQNEEE MNGCRNQRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14510568563Homeobox protein Meis2
3k2a_B2e-14510568563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175874.10.0PREDICTED: homeobox protein ATH1
SwissprotP487312e-94ATH1_ARATH; Homeobox protein ATH1
TrEMBLM1CXR70.0M1CXR7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000769950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82612327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-90homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]