PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001761.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 479aa MW: 51946.1 Da PI: 6.446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001761.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.3e-09	295	343	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Itr_sc001761.1_g00002.1 295 NSHSLAERVRREKISERMKFLQDLVPGC----NKVIGKAVMLDEIINYVQSLQ 343 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.08E-10	290	347	No hit	No description
SuperFamily	SSF47459	9.55E-17	290	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.199	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	293	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-6	295	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	298	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MDMGGKDEFE AGKKGDDGVN IFNSSNMNTA NLEMDSFCSA IWDQPNSVNH LVVGLGDASL 60 HANVEFEPSR ISGGANGGFG VPPSGMLKGS SLLPPAVPRF LPHFQVDSDF VERAARLSCF 120 SGGNMMGDVM NPFSTLECID ARSKGLAPPQ TQRPREVLVG NGLKNESLPI GHNFTEGSSQ 180 EKDIIIRSRE EAKERARAGV SEAESDGLEC LSESAVGHSS SAKGLGSKKR KRRGQGAELD 240 QNKRELTNDQ TEIQQKGASN GSKPGRESDK PGSQTSDTPK DEYIHVRARR GQATNSHSLA 300 ERVRREKISE RMKFLQDLVP GCNKVIGKAV MLDEIINYVQ SLQRQVEFLS MKLATINPGL 360 DFNSDVVFPK EISRAACSSS SLAFPPDMAM PYPPLHPPQP MLIQGGLPGL ENSTAALHRT 420 INSQLPNTSE TNKDHPTSKV SNTWNEFHNV FQMGFNSTAP LSTQFTSSLP PPDLTKTEP

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MDMGGKDEFE AGKKGDDGVN IFNSSNMNTA NLEMDSFCSA IWDQPNSVNH LVVGLGDASL  60
HANVEFEPSR ISGGANGGFG VPPSGMLKGS SLLPPAVPRF LPHFQVDSDF VERAARLSCF  120
SGGNMMGDVM NPFSTLECID ARSKGLAPPQ TQRPREVLVG NGLKNESLPI GHNFTEGSSQ  180
EKDIIIRSRE EAKERARAGV SEAESDGLEC LSESAVGHSS SAKGLGSKKR KRRGQGAELD  240
QNKRELTNDQ TEIQQKGASN GSKPGRESDK PGSQTSDTPK DEYIHVRARR GQATNSHSLA  300
ERVRREKISE RMKFLQDLVP GCNKVIGKAV MLDEIINYVQ SLQRQVEFLS MKLATINPGL  360
DFNSDVVFPK EISRAACSSS SLAFPPDMAM PYPPLHPPQP MLIQGGLPGL ENSTAALHRT  420
INSQLPNTSE TNKDHPTSKV SNTWNEFHNV FQMGFNSTAP LSTQFTSSLP PPDLTKTEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	KKRKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164679.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBL	M1BQK6	1e-128	M1BQK6_SOLTU; Uncharacterized protein
STRING	XP_009631087.1	1e-127	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	7e-70	bHLH family protein