PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001767.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 449aa    MW: 50546.4 Da    PI: 4.3581
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001767.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.31.8e-1641372128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknra...... 77 
                              p G+rF+P d +++ ++L   v+g++   +e+ i + d++ + ePw+L     +++k  yf ++ +kk++  +g+r +r+      
  Itr_sc001767.1_g00001.1   4 PLGLRFQPFDYDVL-RFLFDFVTGRSSVDDEAlICKEDVFgEKEPWELI---PQGKKMAYFLTRLKKKAKsmKGSRVHRTvgrkim 85 
                              89**********99.9999999999944445448888876267*****4...3466777888877776654468888886677777 PP

                      NAM  78 .tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ksg W+ + + k+v+++ ++ l+g k+++v+ ++++p+ +  +W+++e+ l
  Itr_sc001767.1_g00001.1  86 gEKSGNWHGQDTGKAVVDQnGKFLMGYKRSFVYKNKSEPE-QDGQWLLKEFYL 137
                              777**************98445569********9888888.89*******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-142166IPR003441NAC domain
PROSITE profilePS5100520.8933166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010729Biological Processpositive regulation of hydrogen peroxide biosynthetic process
GO:0009536Cellular Componentplastid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEIPLGLRFQ PFDYDVLRFL FDFVTGRSSV DDEALICKED VFGEKEPWEL IPQGKKMAYF  60
LTRLKKKAKS MKGSRVHRTV GRKIMGEKSG NWHGQDTGKA VVDQNGKFLM GYKRSFVYKN  120
KSEPEQDGQW LLKEFYLPVT IIRRARAEFR IVEEREDFVL CYIHPKKEDD DDDDDEEDDE  180
STLEQGGTSS NDFEAVPVPI PVETTTLQIA EGSNDDDDAI NSYFVGVPME TAIVEGVPVE  240
TLLAPTDNNN SYIVGIPVDT IAEGVPVETL LAPQAGNTDA VTDGGSYISC GVPVETSSEP  300
DSFMDFNELI WNIKDVVQKT AATFAPRAST ASKNPAVPGT TLYTVFEVQG YISMLLGGAL  360
SFNLIFPSNE PDIWRLMGMW SIWMFTIPSL RARDCSKNEK EALNYLFLLI PLLNIIVPFF  420
WKSFAVVWSV DIVAFFGMYA WKVGWLQKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369LKKKAKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.16e-07NAC domain containing protein 2