PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001767.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 239aa    MW: 27012.2 Da    PI: 4.1701
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001767.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.31.4e-104101294
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknra...... 77 
                              p G+rF+P d +++ ++L   v+g++   +e+ i + d++ + ePw+L     +++k  yf ++ +kk++  +g+r +r+      
  Itr_sc001767.1_g00002.1   4 PLGLRFQPFDYDVI-RFLFDFVTGRSSVDDEAlICKEDVFgEKEPWELI---PSGKKMAYFLTRLKKKAKsmKGSRVQRTvgrkmm 85 
                              89************.9999999999944445448888876267*****4...4567788998887776664468899997677777 PP

                      NAM  78 .tksgyWkatgkdkevls 94 
                                ksg W+   +dke + 
  Itr_sc001767.1_g00002.1  86 gKKSGNWHG--QDKEFYL 101
                              7779***95..5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6298IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEIPLGLRFQ PFDYDVIRFL FDFVTGRSSV DDEALICKED VFGEKEPWEL IPSGKKMAYF  60
LTRLKKKAKS MKGSRVQRTV GRKMMGKKSG NWHGQDKEFY LPETIIRRAR AEFRIVEERE  120
DFVLCYIHPK KEDDDDDDEE EDDENSLEQG GTSSKDSEAT VIVEGVPVAP TDNISSYIVG  180
IPEDTIAEGV PVETLLAPPA TTDGGSYLVE TSSEPSSFMD FSELIWNIED VTTLIDFDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369LKKKAKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152455.14e-72PREDICTED: NAC domain-containing protein 83-like