PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001767.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 226aa    MW: 24450 Da    PI: 5.4403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001767.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-2057106255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++GVr++  +g+WvAeIr+p   + r +r++lg+f ta eAa+a++ a+++l+g
  Itr_sc001767.1_g00004.1  57 TFRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTALEAARAYDDAARRLYG 106
                              69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-1756112No hitNo description
Gene3DG3DSA:3.30.730.105.3E-3057113IPR001471AP2/ERF domain
PROSITE profilePS5103221.21957114IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2057114IPR016177DNA-binding domain
SMARTSM003802.9E-3357120IPR001471AP2/ERF domain
PfamPF008471.9E-1358106IPR001471AP2/ERF domain
PRINTSPR003673.8E-105869IPR001471AP2/ERF domain
PRINTSPR003673.8E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEESSGDSTI NVRVPVGKND VVPGKPANTG PVKKSNVGRS RKGCMRGKGG PENALCTFRG  60
VRQRTWGKWV AEIREPNRGA RVWLGTFNTA LEAARAYDDA ARRLYGPSAK LNLLDDTSSL  120
SSSPGGGGGG GFTIGDEHYL SSSPGSSATA TSEMSEGKEW YAEECSVLDE ASVFRDRDGK  180
YLLWETPAPS LLDEENNRGW PEFPKDNNGF HCADGSLVTR ETYAYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1558113662ATERF1
3gcc_A5e-1558113662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081431e-47AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046231e-47AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054111e-47AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149641e-47AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393751e-47AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126161e-47CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152457.11e-122PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A328D7I31e-71A0A328D7I3_9ASTE; Uncharacterized protein
STRINGXP_009630729.11e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-35ERF family protein