PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001799.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 299aa    MW: 32864.1 Da    PI: 5.4679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001799.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-3078136259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp+kk+vers+ dp+++++tY+ eHnh+
  Itr_sc001799.1_g00005.1  78 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPAKKQVERSRVDPNMLVVTYSCEHNHP 136
                              69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-3175138IPR003657WRKY domain
SuperFamilySSF1182905.75E-2675138IPR003657WRKY domain
SMARTSM007741.1E-3577137IPR003657WRKY domain
PROSITE profilePS5081131.82378138IPR003657WRKY domain
PfamPF031061.1E-2579136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDGRFSNQPP FINDQDDSEN SPENSADSPR SGMFHDTKMA SINSPKRSRR AIQKRVVSVP  60
INDVEGSKLK GESSFPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP AKKQVERSRV  120
DPNMLVVTYS CEHNHPWPAA RNNHAHRNAV SLTAAAAAAP TTRSSSKAAA DAEDAREAEA  180
EAEASEFSAQ PKPETSEKFG ALGDSPSVIY SDEFGWFSSF EPTTSSSTVI ESTSILTEAR  240
VTHADMSVIF SMREEEEGEE SPFAGLGELP ECSREFGIGM MERDEARRRH NLTPWCGTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2254139680Disease resistance protein RRS1
5w3x_D3e-2254139680Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170036.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A1S4APQ81e-122A0A1S4APQ8_TOBAC; probable WRKY transcription factor 65 isoform X1
STRINGXP_009758490.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-55WRKY DNA-binding protein 65