PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001803.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 349aa    MW: 39101.5 Da    PI: 6.177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001803.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.9e-30128188259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v++itY+g+H+++
  Itr_sc001803.1_g00001.1 128 EDGYSWRKYGQKDILGAKYPRSYYRCTFRlmhNCWATKQVQRSDDDPTVFDITYKGTHTCN 188
                              8**************************99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.138122190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-28124188IPR003657WRKY domain
SuperFamilySSF1182904.18E-26126189IPR003657WRKY domain
SMARTSM007742.4E-39127189IPR003657WRKY domain
PfamPF031061.0E-26128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDNAYNGEYK ALLNELIQGM ECAKQLRVHL NSAASSETQY FFLQRILSSY EKALLILKWR  60
LVGQSHPVAP PLPGAPEPSI SLNGSLDVNN NSFKEQQDYN VSKKRKAMPT WTEQVRVGAE  120
NGLEGPTEDG YSWRKYGQKD ILGAKYPRSY YRCTFRLMHN CWATKQVQRS DDDPTVFDIT  180
YKGTHTCNLA PTTSVPPLRS PENQELKQIH HPNNESLQAM QSNQMLMNLR ASLRVNTDGL  240
DTKETAFPFS FPPTFSGLTD ENQHFQSSQV DDNAVALGTY SPSFVSPTTP ESNYFSASQQ  300
HTNAFKGVHI SSANTSSTNS PIVGLDLDYS LHPATLDPNF PFDTLEFLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-181291851874Disease resistance protein RRS1
5w3x_D4e-181291851874Disease resistance protein RRS1
6ir8_A3e-18128187968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170409.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1J6KDX01e-134A0A1J6KDX0_NICAT; Putative wrky transcription factor 53
STRINGXP_009768979.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-57WRKY family protein