PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001811.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 117aa    MW: 13690.1 Da    PI: 4.5617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001811.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.5e-148733099
                             ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                             k  +   tl+ ++g +W+v +  r  ++ +++++GW+ F ++n+L+ g++v  ++ g + f   vk+f+k
  Itr_sc001811.1_g00005.1  8 KGLGEIATLRRPTGHEWRVHI--RTERDDTFFSDGWETFYEDNDLDIGEVVFYTYLGGMHF--DVKIFNK 73
                             34666799*************..999999**************************999999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.872174IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-16275IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-11272No hitNo description
Gene3DG3DSA:2.40.330.103.8E-17274IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-11773IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MFVKHLGKGL GEIATLRRPT GHEWRVHIRT ERDDTFFSDG WETFYEDNDL DIGEVVFYTY  60
LGGMHFDVKI FNKDGLEKVW DTYAIQNSNE ESDHDNPSTT PGLSYHEMFP NKEDKIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179009.12e-55PREDICTED: B3 domain-containing protein Os01g0723500-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.19e-12B3 family protein