PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001832.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 451aa    MW: 49692.4 Da    PI: 6.2965
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001832.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.3e-053072440
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                             r+C+ + +   + +C+ +  +lC  C    H        H++v
  Itr_sc001832.1_g00003.1 30 RVCDICRSAACSVYCRADLAYLCGGCDARVHAAntvagrHERV 72
                             79******99******************999667777788776 PP
2zf-B_box28.23.8e-0973117442
                 zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                               +C+ +e+ +++  C+ +   lC+ C + +H+       H +vp+
  Itr_sc001832.1_g00003.1  73 LVCEACESAPATVICKADAASLCAACDSDIHSAnplarrHHRVPI 117
                              68*****************************66899999877775 PP
3CCT706e-24382425144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Itr_sc001832.1_g00003.1 382 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 425
                              9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-72774IPR000315B-box-type zinc finger
PROSITE profilePS501199.3432774IPR000315B-box-type zinc finger
CDDcd000219.79E-73074No hitNo description
PROSITE profilePS5011911.29170117IPR000315B-box-type zinc finger
PfamPF006438.7E-772117IPR000315B-box-type zinc finger
CDDcd000212.95E-874117No hitNo description
SMARTSM003361.6E-975117IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648382424IPR010402CCT domain
PfamPF062039.4E-18382424IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLKEESCEVL DLDVTIGSSS GSGNKQTWAR VCDICRSAAC SVYCRADLAY LCGGCDARVH  60
AANTVAGRHE RVLVCEACES APATVICKAD AASLCAACDS DIHSANPLAR RHHRVPILPI  120
SGTLYGPPTS NPCRESSMMV GLTGDATEDN GFLTQDAEET TMDEDEDEAA SWLLLNPNPN  180
PNPNPVKSNN STNMCKGGNN NNNNNEMSCA VEVADAYLDL AEFSSCHDNL FDDKYNSTNQ  240
QQNYSVPQRN MSYGGDSIVP NHGKNQFHYT QALQHNQHRN FQLQGMEYEN FNTGYGYPAS  300
ISHSVSFLHH IQLSHFSHSL ASPVSRSGIK VSISSMDVGV VPESTLSDVS ISHSRPPKGT  360
IDLFTGPPIQ MPQQLQLTQM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR  420
FAKRTDVDTE VDQIFYAPLM AESGYGIVPS F
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3007000.0AF300700.1 Ipomoea nil CONSTANS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185684.11e-169PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-121COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ9FUK80.0Q9FUK8_IPONI; CONSTANS-like protein
STRINGXP_009630583.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-47CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]