PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001850.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 216aa    MW: 24006 Da    PI: 9.819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001850.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19130164135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Itr_sc001850.1_g00009.1 130 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 164
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.2E-17124178IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.11124160IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-16126187No hitNo description
Gene3DG3DSA:3.30.50.104.4E-15127162IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.56E-14129177No hitNo description
PfamPF003201.7E-17130164IPR000679Zinc finger, GATA-type
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEEELEWLSN KDAFPGVETC FDIFGDNPLF DHKSPVSVLE NSSSTSNSNS NSNSGGNGMI  60
SCYDSLRVPV TYPTRPRSKN RKRREAGIGY LPARNCLWVN HVKNKNNKKR SSFKELPATP  120
EETPTIGRRC QHCGVDKTPQ WRAGPMGPKT LCNACGVRYK SGRLLPEYRP ANSPTFSAAV  180
HSNSHRKVLE MRRQRMGGKD GIPSNEACGY RVASGE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181508.11e-134PREDICTED: GATA transcription factor 1 isoform X1
RefseqXP_019181509.11e-134PREDICTED: GATA transcription factor 1 isoform X2
TrEMBLA0A484KBC73e-86A0A484KBC7_9ASTE; Uncharacterized protein
STRINGXP_009767386.14e-85(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-41GATA transcription factor 1