PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001863.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 194aa    MW: 22680.7 Da    PI: 6.684
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001863.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-10851202055
                              HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Itr_sc001863.1_g00014.1  85 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 120
                              4679*****************************885 PP
2ELK391.6e-134061122
                      ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                             ELK++LlrKYsgyL+sLkqE+s
  Itr_sc001863.1_g00014.1 40 ELKNHLLRKYSGYLSSLKQELS 61
                             9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011883.5E-74061IPR005539ELK domain
PROSITE profilePS5121311.2964060IPR005539ELK domain
PfamPF037891.1E-104061IPR005539ELK domain
PROSITE profilePS5007113.03860123IPR001356Homeobox domain
SuperFamilySSF466891.92E-2061135IPR009057Homeodomain-like
SMARTSM003896.6E-1362127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-2865126IPR009057Homeodomain-like
CDDcd000861.28E-1272124No hitNo description
PfamPF059205.3E-1780119IPR008422Homeobox KN domain
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MIGEWTDDKC EGVGSSEDDQ DNSGGETELP EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL  60
SKKKKKGKLP KEARQKLLNW WELHYKWPYP SETEKVALAE STGLDQKQIN NWFINQRKRH  120
WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG DGPYRLDRLE IYAYTMPFGR LAGNLERGEL  180
ARLTSRLSLI CNLW
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2830290.0AB283029.1 Ipomoea batatas Ibkn3 mRNA for class-I knotted1-like homeobox protein IBKN3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153386.11e-107PREDICTED: homeotic protein knotted-1-like
SwissprotO041351e-92KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA8QXP71e-107A8QXP7_IPOBA; Class-I knotted1-like homeobox protein IBKN3
STRINGEOY156245e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-80KNOTTED-like from Arabidopsis thaliana