PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001868.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 356aa MW: 39943.9 Da PI: 7.6339

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001868.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkat Itr_sc001868.1_g00005.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLPI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKAT 98 579*************************.89***********8888999*************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Itr_sc001868.1_g00005.1 99 GTDRPIYSSeGTKCIGLKKSLVFYRGRAAKGLKTDWMMHEFRL 141 ****956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-59	13	175	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	14	175	IPR003441	NAC domain
Pfam	PF02365	1.0E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGSIMDDKII DDVMLPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP 60 KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYRGRAAKGL KTDWMMHEFR LPTTPAPPPP PTNKFSGHNN FPPNDSWAIC RIFKKTSSMA 180 NRANFAHPWV NNILSEAPPE TLFNQFGSEN IMSSSSSITP LQLSTNNELQ HFSAPPLNNI 240 IPTYKPSSSS LFSNHHSPSS PSSTPSPELP SCSNFMAPSS SSSLSQAASV LFDVTPPTLF 300 SPLNNTATSD HFEQSQHMED DDEVVGLGNI RAMGFPFSLA SEPWKQSSFS WDSPTY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGSIMDDKII DDVMLPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYRGRAAKGL KTDWMMHEFR LPTTPAPPPP PTNKFSGHNN FPPNDSWAIC RIFKKTSSMA  180
NRANFAHPWV NNILSEAPPE TLFNQFGSEN IMSSSSSITP LQLSTNNELQ HFSAPPLNNI  240
IPTYKPSSSS LFSNHHSPSS PSSTPSPELP SCSNFMAPSS SSSLSQAASV LFDVTPPTLF  300
SPLNNTATSD HFEQSQHMED DDEVVGLGNI RAMGFPFSLA SEPWKQSSFS WDSPTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	1	178	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	1	178	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	1	178	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	1	178	4	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	1	178	7	171	NAC domain-containing protein 19
3swm_B	1e-53	1	178	7	171	NAC domain-containing protein 19
3swm_C	1e-53	1	178	7	171	NAC domain-containing protein 19
3swm_D	1e-53	1	178	7	171	NAC domain-containing protein 19
3swp_A	1e-53	1	178	7	171	NAC domain-containing protein 19
3swp_B	1e-53	1	178	7	171	NAC domain-containing protein 19
3swp_C	1e-53	1	178	7	171	NAC domain-containing protein 19
3swp_D	1e-53	1	178	7	171	NAC domain-containing protein 19
4dul_A	1e-53	1	178	4	168	NAC domain-containing protein 19
4dul_B	1e-53	1	178	4	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157128.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Refseq	XP_019157129.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	4e-98	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2G3D9M2	1e-131	A0A2G3D9M2_CAPCH; Putative NAC domain-containing protein 94
STRING	Solyc02g087920.2.1	1e-130	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	2e-98	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]