PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001876.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 1208aa    MW: 137391 Da    PI: 9.6756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001876.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-171562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l d+v + G g+W   +++ g++R++k+c++rw +yl
  Itr_sc001876.1_g00010.1 15 KGPWTAEEDQKLSDYVSKNGHGNWQMLPKKAGLNRCGKSCRLRWTNYL 62
                             79********************************************97 PP
2Myb_DNA-binding50.93.5e-1668112147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg +++eE++++++++  lG++ W++Ia++++ gRt++++k++w++ 
  Itr_sc001876.1_g00010.1  68 RGGFSQEEEQIIINLHSSLGNK-WSRIAAHLP-GRTDNEIKNFWNTN 112
                              788*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5741062IPR017930Myb domain
SuperFamilySSF466895.24E-3013109IPR009057Homeodomain-like
SMARTSM007172.7E-141464IPR001005SANT/Myb domain
PfamPF002499.9E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231669IPR009057Homeodomain-like
CDDcd001672.96E-91762No hitNo description
PROSITE profilePS5129425.97163117IPR017930Myb domain
SMARTSM007174.8E-1667115IPR001005SANT/Myb domain
PfamPF002491.1E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2670117IPR009057Homeodomain-like
CDDcd001672.15E-1071113No hitNo description
SuperFamilySSF562196.99E-9390493IPR005135Endonuclease/exonuclease/phosphatase
PfamPF000781.3E-15583725IPR000477Reverse transcriptase domain
Gene3DG3DSA:3.30.420.102.9E-410431183IPR012337Ribonuclease H-like domain
CDDcd062222.83E-910521183No hitNo description
SuperFamilySSF530983.29E-810531189IPR012337Ribonuclease H-like domain
PfamPF134563.4E-1010631184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1208 aa     Download sequence    Send to blast
MGRYPCCKDS EEVKKGPWTA EEDQKLSDYV SKNGHGNWQM LPKKAGLNRC GKSCRLRWTN  60
YLRPDIKRGG FSQEEEQIII NLHSSLGNKW SRIAAHLPGR TDNEIKNFWN TNLRKKLLRM  120
GIDPKTHQPI TDINLLLNLS HQMLLSNTNN PLGSALRDLD DLAVMKSNTQ GDATHEWKSG  180
MKVEFLSHKN ECAPAPKEKK KIERIVEQIG NSLGKFVKSD SNNFGGNWSS YLRLATFCYF  240
CGILGHSVKY CRGALQSDLQ MPDYYFGVWM RASLRRTVAP ISERWLGNTE DSKTMGTPLQ  300
TPNFDSATTM HGDLSKEPSS SANARVSMDL DENGITVVDT KRRRGNNHEK KIGSEAQLVK  360
PPPPSAQSSP AKLASQARLT GKRKGVAAYR LLWAPRNLIR SLSNNSDLSW LMLGDFNDLT  420
KQSEKRGLRQ QPNALIDGFN STLNDIGLHD IGMHGYQFTR SRGRGTPGWV EERLDRAVAN  480
TQWCADHSQT VVLNIGDGNT RFFHQYASGR KKKNHIVRLR NAEGQWVEES PDKAPCSDGM  540
NPKFFQHFWH LMGDDISDFV SNCVFTCQFP QGLGKANIVL LPKKQTPKTV AELRPIALCN  600
TIYKVIAKLL ANRMKGMLRA EVGHFLRRKV GGVQGWAGLK LDMTKAYDRM EWDYVRFMLT  660
KFGFADEWAN LIMLCVESVE YDIRLNEGLF GPVGPSHGLR RGDPLSPYMF ILCSGGLSAL  720
IRDAEMKGTI HGCRIARGAS AVTHLISNTP TETRDMISNC IAVPIAADFG KYLGLPSVIG  780
RNKKEVFKYI DQKIRQRVGS WQKKLLSRAR KETLIKTVAQ SLPTYSMSVY LLPDLLCDTL  840
QKVMNKYFWE SGRGNSKAGR EVIKIGLARR IGNGRQTKIW WVPWLHDRNN PELVTPDQAL  900
HDDQWVSSLL LPDYERWNVE LIRDLFDPMD VNRIMKTPVN REMEDGWYWR HELRGVWAAV  960
SIPINLTAPN FSRWLEPVLT KANGETQKKI AVIIWFIWCE RNALVWNNKS FNANNVLCQA  1020
LNWLTDWYDL IKRKVMTNVR TESPQPTAAL RCFVDVLLFE NVDLGGFGVI AINNEDFIVA  1080
ACSGTHYSSL DPYHVELWAI KEALSWIKKE NWCSQKKKKE NWSGVVVCSD CLNACNALNK  1140
PSDDRSYVGI IIRQCHDIME TLHQTSIMHV ARGRNTRVHE LAKSSILYRN SRYWRFEPPV  1200
CTLEFSIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27151177108B-MYB
1h8a_C5e-271211724128MYB TRANSFORMING PROTEIN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-65myb domain protein 9