PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001884.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 180aa    MW: 20315.2 Da    PI: 11.1146
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001884.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP54.16.2e-17370773
                      TCP  7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec 73
                             r+  + +++ gR+RR+Rl+ e  +rfF+L + LG+ +++ t+eW l+++k++i +l + ++ ++ +++
  Itr_sc001884.1_g00005.1  3 RKTNRRSSGTGRGRRIRLPGEFSKRFFELKKLLGHQRPGLTLEWRLENSKEEIEDLRSKKAVNHeNDV 70
                             7788999*************************************************999443331333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136913.823158IPR017887Transcription factor TCP subgroup
PfamPF036348.1E-151387IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTRKTNRRSS GTGRGRRIRL PGEFSKRFFE LKKLLGHQRP GLTLEWRLEN SKEEIEDLRS  60
KKAVNHENDV LVPSPSSSLD ESGLTTSPRR LKTVLPPFVY GMEIEMDFSP DEVARIRSRE  120
PMTPSPSGVT LWIAGSSFGW GILTNTWSTA PPGPHPPGSR AGMWPSRTRV DPLSRNLYFL