PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001923.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 230aa    MW: 25166.4 Da    PI: 5.6486
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001923.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.56.9e-36381391100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqp..kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                              +C aCk+lrrkC ++C++apyf  +++   +fa+vhk+FG+sn +k+l ++p ++r++a+ +l yeA+ar++dP+yG+v++il+l+
  Itr_sc001923.1_g00011.1  38 PCGACKFLRRKCIPSCIFAPYFEYSDQgvTRFAAVHKVFGTSNASKILLRTPANRRHCAAITLSYEAQARLSDPIYGCVSTILALK 123
                              7*********************8865434********************************************************* PP

                   DUF260  85 qqleqlkaelallkee 100
                              qq+++l+ae+a++k+e
  Itr_sc001923.1_g00011.1 124 QQVASLEAEIAMVKTE 139
                              ***********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55537140IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3438137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDTYSHGDGA SSDIAPKHMS TEKQVASESV GVVVIKAPCG ACKFLRRKCI PSCIFAPYFE  60
YSDQGVTRFA AVHKVFGTSN ASKILLRTPA NRRHCAAITL SYEAQARLSD PIYGCVSTIL  120
ALKQQVASLE AEIAMVKTEI MNSTFAVENG LQTSQQQEEP TYFNTSSTAA LNKDVLNISN  180
FSSNFNLIGE TIYADSQCFD PLVQLSCPFP AGGNEEQSYY PIAFTNQMFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-333715410125LOB family transfactor Ramosa2.1
5ly0_B1e-333715410125LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168043.15e-93PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-52LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A328DXL06e-76A0A328DXL0_9ASTE; Uncharacterized protein
STRINGcassava4.1_028764m8e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-55LOB domain-containing protein 20