PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001927.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 292aa MW: 33528.4 Da PI: 9.4145

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001927.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.1	4.3e-10	4	78	18	98
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p + +++++ + s +++ +sg +W v + +k++++ ++ +G ++F ++n + + ++Fk++++s+f +v++f+ Itr_sc001927.1_g00011.1 4 IPGELIQKYKDE--LSDLVKFCLPSGGEWVVHF--KKNKKMAWFDDGFESFMEDNSIGINYLLLFKYTKDSRF--NVHIFD 78 778888888644..778999999********..******************************999999..999997 PP
2	B3	52.8	7.4e-17	189	277	5	96
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 lt s+vl+ + +++ +f+++ g +++ + lede+g++W vk+++r ++ ++ l+ GW+ Fv+ ++L +g ++vF+l+++ Itr_sc001927.1_g00011.1 189 LTESNVLRIS-MYVAADFVRSLlPG---KPRSIYLEDENGKRWIVKCRFRSRRVSH-LSYGWRLFVQHKKLVAGNVCVFELVKDsP 269 5667777776.99999999988533...4456*************888888777.777********************9988 PP EE..EEEE CS B3 89 efelvvkv 96 ++v+kv Itr_sc001927.1_g00011.1 270 ADKPVLKV 277 88888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.968	1	80	IPR003340	B3 DNA binding domain
SMART	SM01019	0.092	1	80	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-14	2	79	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-13	3	79	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.0E-8	3	78	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.53E-19	181	281	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-20	181	280	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.23E-16	183	281	No hit	No description
PROSITE profile	PS50863	12.323	184	283	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-10	186	283	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-14	189	277	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MQRIPGELIQ KYKDELSDLV KFCLPSGGEW VVHFKKNKKM AWFDDGFESF MEDNSIGINY 60 LLLFKYTKDS RFNVHIFDLT ATEIDYPCNS HGAQKRCDSV KGILGGGGDC SSGDDGIDQS 120 IFGSGMKRQR TTSLKEQRMY SSYESKVRKV KERSVILDGS DDANKHNIPK REKIEGNVVF 180 QNPHVAVRLT ESNVLRISMY VAADFVRSLL PGKPRSIYLE DENGKRWIVK CRFRSRRVSH 240 LSYGWRLFVQ HKKLVAGNVC VFELVKDSPA DKPVLKVYIF PSWEDLPQIF SH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172930.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8557	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-18	B3 family protein