PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001942.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 590aa    MW: 66744.4 Da    PI: 6.9927
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001942.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.35.9e-10409436835
                     GATA   8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              +Tp WR g + ++ LCnaCG ++r++g+
  Itr_sc001942.1_g00004.1 409 DTPRWRAGLEEKPVLCNACGSRWRLRGK 436
                              5********99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF141113.6E-3855197IPR025558Domain of unknown function DUF4283
PfamPF143924.9E-22199247IPR025836Zinc knuckle CX2CX4HX4C
SMARTSM004010.0046393451IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-6402439No hitNo description
Gene3DG3DSA:3.30.50.103.6E-7408437IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.5E-8409436IPR000679Zinc finger, GATA-type
CDDcd002024.69E-7410435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEGPQNESAH TQPPPPTETN PLPQTTATLS EIAHACAGLS INNSDLIFDE DEDTDSEGDY  60
CYALVGRLLT EKLIKFNIMK ETMAAIWRPG KGLVVTELAP NLFLFQFFHE VDMNRILDDG  120
PWAFEQCILV LEKLRPDIPP HEMQLGMADF WVQVHDLPLG FFSEKVVMAI GNHVGKFIKS  180
DKTNFESLWK SFLHIRVSID ITKPLIAKMR IKRKDGDCVW ISFKYERLPH FCFICGLLGH  240
TEKFCHKLFE GVKLDDEKQY GVWLRAAGRR AFTGNGKQVA IFREARVSHV HLECTKMQVE  300
GEASLLSDVV MNHGDLYEDG LVVLDQKRRR TKLQSPTTLS TQQAVKFSTP PSPKNLHVAG  360
PPIKTKLGFT GLFVEDGYGN KVSGGFEDVD YTPSPYYDRP HCHLLLEEDT PRWRAGLEEK  420
PVLCNACGSR WRLRGKLNDY VPKHGIRDAS GNIHKLPSKK HAVKITSQQK LRAGKMPKEG  480
EFSISSSESS VTSPVNCMLT QGTEVCLSGE AAQWPVWYPK NVTRRKRSNL QKQPSSLIDT  540
LHLQLYHIQQ DLEDENKSEE EDILVYNKWQ YIPDSDIGLG NMLHKPPAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325332QKRRRTKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.12e-13GATA transcription factor 26