PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001957.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21439.5 Da    PI: 9.7691
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001957.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.5e-242169250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             rien+ +r vtfskRr+g++KKA+E+S+LC++e+a+++fs++gk + +s
  Itr_sc001957.1_g00003.1 21 RIENDVQRRVTFSKRRTGLFKKASEMSTLCGTEIAMVVFSPSGKPFSFS 69
                             9******************************************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.5391272IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-291271IPR002100Transcription factor, MADS-box
CDDcd002652.37E-321380No hitNo description
SuperFamilySSF554551.57E-261387IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-201434IPR002100Transcription factor, MADS-box
PfamPF003193.4E-252168IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-203449IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-204970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSRRNTSRGV TRGRQRVPLA RIENDVQRRV TFSKRRTGLF KKASEMSTLC GTEIAMVVFS  60
PSGKPFSFSN PDMNTVLTKY FGENPRTEAN VAEHIIRAHQ DAKMRAMTSQ INVLEALIDE  120
EMLVDQALRE AEKGRPSISD LQLPELQSMK HHMETLLDQV TEKLNMISIM GAQSQAMETR  180
FGANDGAGPS GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-191398186Myocyte-specific enhancer factor 2A
3kov_B7e-191398186Myocyte-specific enhancer factor 2A
3kov_I7e-191398186Myocyte-specific enhancer factor 2A
3kov_J7e-191398186Myocyte-specific enhancer factor 2A
3p57_A7e-191398186Myocyte-specific enhancer factor 2A
3p57_B7e-191398186Myocyte-specific enhancer factor 2A
3p57_C7e-191398186Myocyte-specific enhancer factor 2A
3p57_D7e-191398186Myocyte-specific enhancer factor 2A
3p57_I7e-191398186Myocyte-specific enhancer factor 2A
3p57_J7e-191398186Myocyte-specific enhancer factor 2A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179195.12e-70PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A328DKU41e-60A0A328DKU4_9ASTE; Uncharacterized protein
TrEMBLA0A484NMH57e-61A0A484NMH5_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-29AGAMOUS-like 61